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LOC4334090 cDNA ORF clone, Oryza sativa Japonica Group(Japanese rice)

Summary

Gene Symbol LOC4334090
Entrez Gene ID 4334090
Full Name autophagy-related protein 16
Gene Type protein-coding
Organism Oryza sativa Japonica Group(Japanese rice)

Reference Sequences (RefSeq)

mRNA and Protein(s)

mRNA Protein Name
XM_015772748.1 XP_015628234.1 autophagy-related protein 16
XM_015772748.2 XP_015628234.1 autophagy-related protein 16

Pathways from BioSystems


Homologies


Canis lupus familiaris (dog) ATG16L1 XP_850664.1
Drosophila melanogaster (fruit fly) CG31033 NP_733313.2
Bos taurus (cattle) ATG16L1 NP_001178318.1
Rattus norvegicus (Norway rat) Atg16l1 NP_001102279.2
Xenopus tropicalis (tropical clawed frog) atg16l1 NP_001017343.1
Pan troglodytes (chimpanzee) ATG16L1 XP_001150112.1
Gallus gallus (chicken) ATG16L1 XP_004936997.1
Arabidopsis thaliana (thale cress) AT5G50230 NP_199834.2
Oryza sativa (rice) Os03g0746600 NP_001051251.1
Homo sapiens (human) ATG16L1 NP_110430.5
ATG16L1 XP_001114814.1
Mus musculus (house mouse) Atg16l1 NP_084122.2
Danio rerio (zebrafish) atg16l1 NP_001017854.1

Gene Ontology

The following LOC4334090 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC4334090 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OOa08184 XM_015772748.2
Latest version!		 Oryza sativa Japonica Group autophagy-related protein 16 (LOC4334090), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $342.30
$489.00
View Old Accession Versions >>
OOa08184 XM_015772748.1 Oryza sativa Japonica Group autophagy-related protein 16 (LOC4334090), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $342.30
$489.00
Hide Old Accession Versions >>

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)


CloneID OOa08184
Clone ID Related Accession (Same CDS sequence) XM_015772748.1 , XM_015772748.2
Accession Version XM_015772748.1 Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 1536bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2016-02-29
Organism Oryza sativa Japonica Group(Japanese rice)
Product autophagy-related protein 16
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015379176.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Oryza sativa Japonica Group Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
ATGACGATGG TGGAGGCCGA GGCCGGCAAG GAGGCGATCC GGCGAGCCCT GCGGTCTCTG 
CGGCGGAGGC ATCTCGTCGA GGAGGGCGCC CACCGCCCGG CCATCGAGGC GCTCGCCCGG 
CCCTTCGCCG CCCAAGCGGT GGAGTGGAAA GAGAAGGCTG AGAAGCATGA ATTGGAGCTG 
CAGCAATGCT ACAAGGCTCA GTCACGTTTG TCCGAGCAGC TCGTTACCGA GATAGAAGAG 
GGGAAAGCAT CAAAAGCGCT GCTTAAAGAG AAAGAAACAC TGATTACTAC CATGCAGACT 
GAACTCGAGC AAACCAGGGA AGAAAATACG CAGCTCAAGC AGTCGCTTGA AGAAAAAACA 
AGCGCTTTAG ATCTTATAAT TCAGGAGCAC CAGGCAGTTA AAGCTGAACT TGAACAGGCA 
TTAACAAAAC AGAAAGTGGC AGAAGATGAA AACAGGAATC TGATTGATCG ATGGATGCTT 
GAGAAGATGA AGGATGCAGA GAGGCTTAAT GAGGCAAATG CAATGTATGA GGAGATGGTT 
CTAAAGCTGA AGTCAGCTGG TGTTGGTGGT ATACAACACA ATGCACTACA AGAAGCTGAT 
GGCATCATTC GTCGTTCTGA AGCTGGGTAC ATGGACATCA TGGAAACACC AATCCCATCT 
ACATGCAGAA TCACTATCCG TGCTCATGAT GGTGGCTGTG GATCTATAAT TTTCCAGCAT 
AACACAGACA AGCTAATCAG TGGTGGCCAG GATCAAACTG TCAAGATTTG GTCTGCACAT 
ACCGGTGCTT TAACCTCCAC TCTACAAGGC TGTTTGGGGT CTGTCAATGA TCTTGCTGTG 
ACTAATGACA ACAAGTTTGT GATTGCTGCC TGTAGCTCTA ACAAATTGTT TGTATGGGAA 
GTTAATGGGG GGCGCCCACG TCACACTCTG ACTGGTCACA CAAAAAATGT TTCATCCGTT 
GATGCAAGCT GGGTGAAGAG CTGTGTTCTT GCTAGTTCAT CCAATGATCA TACCATCAAG 
ATTTGGGATC TTCAGTCAGG CTTCTGCAAA AGCACCATAA TGTCAGGGAG CAACGCCAAC 
TCACTAGCTT TCATTGATGG TGTCACCCTT TGCTCGGGTC ATAGGGATGG ACACCTTCGG 
TTATGGGACA TCCGAAGTGC AAAATGCACT AGTCAGACAT TCGCTCATCT TGACGTAAGC 
TCTGTCAGTG TGTCACGGAA TAGAAATTTC ATTCTTACAA GTGGAAAGGA TAACGTGCAC 
AACCTTTTTG ATCCTAGAAC AATGGAAGTT TGTGGAAAAT TCAAGGCCAT GGGTAACAGA 
GTGGTTAGCA GCTGGGGCAG GCCTTGCATA AGCCCTGATG AAAACTCCAT AGCTGCTGGT 
GCTAATGATG GGTCTGTTTA CATATGGTCA AGATTGAAAA AGGATGGGGT ACCGACGATC 
CTACAGGGCC ATTCTTCGTC GGTAGTTTCA AGTTCATGGT GTGGGTTAGG ACCTCTTGCT 
ACCGCTGACA AGCATCATAT CTATATCTGG ACTTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_015628234.1
CDS181..1716
Translation

Target ORF information:

RefSeq Version XM_015772748.1
Organism Oryza sativa Japonica Group(Japanese rice)
Definition Oryza sativa Japonica Group autophagy-related protein 16 (LOC4334090), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_015772748.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
ATGACGATGG TGGAGGCCGA GGCCGGCAAG GAGGCGATCC GGCGAGCCCT GCGGTCTCTG 
CGGCGGAGGC ATCTCGTCGA GGAGGGCGCC CACCGCCCGG CCATCGAGGC GCTCGCCCGG 
CCCTTCGCCG CCCAAGCGGT GGAGTGGAAA GAGAAGGCTG AGAAGCATGA ATTGGAGCTG 
CAGCAATGCT ACAAGGCTCA GTCACGTTTG TCCGAGCAGC TCGTTACCGA GATAGAAGAG 
GGGAAAGCAT CAAAAGCGCT GCTTAAAGAG AAAGAAACAC TGATTACTAC CATGCAGACT 
GAACTCGAGC AAACCAGGGA AGAAAATACG CAGCTCAAGC AGTCGCTTGA AGAAAAAACA 
AGCGCTTTAG ATCTTATAAT TCAGGAGCAC CAGGCAGTTA AAGCTGAACT TGAACAGGCA 
TTAACAAAAC AGAAAGTGGC AGAAGATGAA AACAGGAATC TGATTGATCG ATGGATGCTT 
GAGAAGATGA AGGATGCAGA GAGGCTTAAT GAGGCAAATG CAATGTATGA GGAGATGGTT 
CTAAAGCTGA AGTCAGCTGG TGTTGGTGGT ATACAACACA ATGCACTACA AGAAGCTGAT 
GGCATCATTC GTCGTTCTGA AGCTGGGTAC ATGGACATCA TGGAAACACC AATCCCATCT 
ACATGCAGAA TCACTATCCG TGCTCATGAT GGTGGCTGTG GATCTATAAT TTTCCAGCAT 
AACACAGACA AGCTAATCAG TGGTGGCCAG GATCAAACTG TCAAGATTTG GTCTGCACAT 
ACCGGTGCTT TAACCTCCAC TCTACAAGGC TGTTTGGGGT CTGTCAATGA TCTTGCTGTG 
ACTAATGACA ACAAGTTTGT GATTGCTGCC TGTAGCTCTA ACAAATTGTT TGTATGGGAA 
GTTAATGGGG GGCGCCCACG TCACACTCTG ACTGGTCACA CAAAAAATGT TTCATCCGTT 
GATGCAAGCT GGGTGAAGAG CTGTGTTCTT GCTAGTTCAT CCAATGATCA TACCATCAAG 
ATTTGGGATC TTCAGTCAGG CTTCTGCAAA AGCACCATAA TGTCAGGGAG CAACGCCAAC 
TCACTAGCTT TCATTGATGG TGTCACCCTT TGCTCGGGTC ATAGGGATGG ACACCTTCGG 
TTATGGGACA TCCGAAGTGC AAAATGCACT AGTCAGACAT TCGCTCATCT TGACGTAAGC 
TCTGTCAGTG TGTCACGGAA TAGAAATTTC ATTCTTACAA GTGGAAAGGA TAACGTGCAC 
AACCTTTTTG ATCCTAGAAC AATGGAAGTT TGTGGAAAAT TCAAGGCCAT GGGTAACAGA 
GTGGTTAGCA GCTGGGGCAG GCCTTGCATA AGCCCTGATG AAAACTCCAT AGCTGCTGGT 
GCTAATGATG GGTCTGTTTA CATATGGTCA AGATTGAAAA AGGATGGGGT ACCGACGATC 
CTACAGGGCC ATTCTTCGTC GGTAGTTTCA AGTTCATGGT GTGGGTTAGG ACCTCTTGCT 
ACCGCTGACA AGCATCATAT CTATATCTGG ACTTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OOa08184
Clone ID Related Accession (Same CDS sequence) XM_015772748.1 , XM_015772748.2
Accession Version XM_015772748.2 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 1536bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2018-08-06
Organism Oryza sativa Japonica Group(Japanese rice)
Product autophagy-related protein 16
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029258.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 7, 2018 this sequence version replaced XM_015772748.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
ATGACGATGG TGGAGGCCGA GGCCGGCAAG GAGGCGATCC GGCGAGCCCT GCGGTCTCTG 
CGGCGGAGGC ATCTCGTCGA GGAGGGCGCC CACCGCCCGG CCATCGAGGC GCTCGCCCGG 
CCCTTCGCCG CCCAAGCGGT GGAGTGGAAA GAGAAGGCTG AGAAGCATGA ATTGGAGCTG 
CAGCAATGCT ACAAGGCTCA GTCACGTTTG TCCGAGCAGC TCGTTACCGA GATAGAAGAG 
GGGAAAGCAT CAAAAGCGCT GCTTAAAGAG AAAGAAACAC TGATTACTAC CATGCAGACT 
GAACTCGAGC AAACCAGGGA AGAAAATACG CAGCTCAAGC AGTCGCTTGA AGAAAAAACA 
AGCGCTTTAG ATCTTATAAT TCAGGAGCAC CAGGCAGTTA AAGCTGAACT TGAACAGGCA 
TTAACAAAAC AGAAAGTGGC AGAAGATGAA AACAGGAATC TGATTGATCG ATGGATGCTT 
GAGAAGATGA AGGATGCAGA GAGGCTTAAT GAGGCAAATG CAATGTATGA GGAGATGGTT 
CTAAAGCTGA AGTCAGCTGG TGTTGGTGGT ATACAACACA ATGCACTACA AGAAGCTGAT 
GGCATCATTC GTCGTTCTGA AGCTGGGTAC ATGGACATCA TGGAAACACC AATCCCATCT 
ACATGCAGAA TCACTATCCG TGCTCATGAT GGTGGCTGTG GATCTATAAT TTTCCAGCAT 
AACACAGACA AGCTAATCAG TGGTGGCCAG GATCAAACTG TCAAGATTTG GTCTGCACAT 
ACCGGTGCTT TAACCTCCAC TCTACAAGGC TGTTTGGGGT CTGTCAATGA TCTTGCTGTG 
ACTAATGACA ACAAGTTTGT GATTGCTGCC TGTAGCTCTA ACAAATTGTT TGTATGGGAA 
GTTAATGGGG GGCGCCCACG TCACACTCTG ACTGGTCACA CAAAAAATGT TTCATCCGTT 
GATGCAAGCT GGGTGAAGAG CTGTGTTCTT GCTAGTTCAT CCAATGATCA TACCATCAAG 
ATTTGGGATC TTCAGTCAGG CTTCTGCAAA AGCACCATAA TGTCAGGGAG CAACGCCAAC 
TCACTAGCTT TCATTGATGG TGTCACCCTT TGCTCGGGTC ATAGGGATGG ACACCTTCGG 
TTATGGGACA TCCGAAGTGC AAAATGCACT AGTCAGACAT TCGCTCATCT TGACGTAAGC 
TCTGTCAGTG TGTCACGGAA TAGAAATTTC ATTCTTACAA GTGGAAAGGA TAACGTGCAC 
AACCTTTTTG ATCCTAGAAC AATGGAAGTT TGTGGAAAAT TCAAGGCCAT GGGTAACAGA 
GTGGTTAGCA GCTGGGGCAG GCCTTGCATA AGCCCTGATG AAAACTCCAT AGCTGCTGGT 
GCTAATGATG GGTCTGTTTA CATATGGTCA AGATTGAAAA AGGATGGGGT ACCGACGATC 
CTACAGGGCC ATTCTTCGTC GGTAGTTTCA AGTTCATGGT GTGGGTTAGG ACCTCTTGCT 
ACCGCTGACA AGCATCATAT CTATATCTGG ACTTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_015628234.1
CDS195..1730
Translation

Target ORF information:

RefSeq Version XM_015772748.2
Organism Oryza sativa Japonica Group(Japanese rice)
Definition Oryza sativa Japonica Group autophagy-related protein 16 (LOC4334090), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_015772748.2

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
ATGACGATGG TGGAGGCCGA GGCCGGCAAG GAGGCGATCC GGCGAGCCCT GCGGTCTCTG 
CGGCGGAGGC ATCTCGTCGA GGAGGGCGCC CACCGCCCGG CCATCGAGGC GCTCGCCCGG 
CCCTTCGCCG CCCAAGCGGT GGAGTGGAAA GAGAAGGCTG AGAAGCATGA ATTGGAGCTG 
CAGCAATGCT ACAAGGCTCA GTCACGTTTG TCCGAGCAGC TCGTTACCGA GATAGAAGAG 
GGGAAAGCAT CAAAAGCGCT GCTTAAAGAG AAAGAAACAC TGATTACTAC CATGCAGACT 
GAACTCGAGC AAACCAGGGA AGAAAATACG CAGCTCAAGC AGTCGCTTGA AGAAAAAACA 
AGCGCTTTAG ATCTTATAAT TCAGGAGCAC CAGGCAGTTA AAGCTGAACT TGAACAGGCA 
TTAACAAAAC AGAAAGTGGC AGAAGATGAA AACAGGAATC TGATTGATCG ATGGATGCTT 
GAGAAGATGA AGGATGCAGA GAGGCTTAAT GAGGCAAATG CAATGTATGA GGAGATGGTT 
CTAAAGCTGA AGTCAGCTGG TGTTGGTGGT ATACAACACA ATGCACTACA AGAAGCTGAT 
GGCATCATTC GTCGTTCTGA AGCTGGGTAC ATGGACATCA TGGAAACACC AATCCCATCT 
ACATGCAGAA TCACTATCCG TGCTCATGAT GGTGGCTGTG GATCTATAAT TTTCCAGCAT 
AACACAGACA AGCTAATCAG TGGTGGCCAG GATCAAACTG TCAAGATTTG GTCTGCACAT 
ACCGGTGCTT TAACCTCCAC TCTACAAGGC TGTTTGGGGT CTGTCAATGA TCTTGCTGTG 
ACTAATGACA ACAAGTTTGT GATTGCTGCC TGTAGCTCTA ACAAATTGTT TGTATGGGAA 
GTTAATGGGG GGCGCCCACG TCACACTCTG ACTGGTCACA CAAAAAATGT TTCATCCGTT 
GATGCAAGCT GGGTGAAGAG CTGTGTTCTT GCTAGTTCAT CCAATGATCA TACCATCAAG 
ATTTGGGATC TTCAGTCAGG CTTCTGCAAA AGCACCATAA TGTCAGGGAG CAACGCCAAC 
TCACTAGCTT TCATTGATGG TGTCACCCTT TGCTCGGGTC ATAGGGATGG ACACCTTCGG 
TTATGGGACA TCCGAAGTGC AAAATGCACT AGTCAGACAT TCGCTCATCT TGACGTAAGC 
TCTGTCAGTG TGTCACGGAA TAGAAATTTC ATTCTTACAA GTGGAAAGGA TAACGTGCAC 
AACCTTTTTG ATCCTAGAAC AATGGAAGTT TGTGGAAAAT TCAAGGCCAT GGGTAACAGA 
GTGGTTAGCA GCTGGGGCAG GCCTTGCATA AGCCCTGATG AAAACTCCAT AGCTGCTGGT 
GCTAATGATG GGTCTGTTTA CATATGGTCA AGATTGAAAA AGGATGGGGT ACCGACGATC 
CTACAGGGCC ATTCTTCGTC GGTAGTTTCA AGTTCATGGT GTGGGTTAGG ACCTCTTGCT 
ACCGCTGACA AGCATCATAT CTATATCTGG ACTTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

PubMed