Gene Symbol | tsr1 |
Entrez Gene ID | 325037 |
Full Name | TSR1, 20S rRNA accumulation, homolog (S. cerevisiae) |
Synonyms | fc52b09,wu:fc52b09,zgc:123319 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
ORF » Species Summary » Danio rerio » tsr1 cDNA ORF clone
Gene Symbol | tsr1 |
Entrez Gene ID | 325037 |
Full Name | TSR1, 20S rRNA accumulation, homolog (S. cerevisiae) |
Synonyms | fc52b09,wu:fc52b09,zgc:123319 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
mRNA | Protein | Name |
---|---|---|
NM_001037370.2 | NP_001032447.2 | pre-rRNA-processing protein TSR1 homolog |
XM_005157568.3 | XP_005157625.1 | pre-rRNA-processing protein TSR1 homolog isoform X1 |
XM_005157568.4 | XP_005157625.1 | pre-rRNA-processing protein TSR1 homolog isoform X1 |
Homo sapiens (human) | TSR1 | NP_060598.3 |
Rattus norvegicus (Norway rat) | Tsr1 | XP_002727820.1 |
Saccharomyces cerevisiae (baker's yeast) | TSR1 | NP_010223.1 |
Schizosaccharomyces pombe (fission yeast) | SPAC23H4.15 | NP_593391.1 |
Canis lupus familiaris (dog) | LOC610048 | XP_852531.1 |
Mus musculus (house mouse) | Tsr1 | NP_796299.2 |
Caenorhabditis elegans (roundworm) | tag-151 | NP_494840.1 |
Magnaporthe oryzae (rice blast fungus) | MGG_01087 | XP_003717850.1 |
Arabidopsis thaliana (thale cress) | AT1G42440 | NP_564480.1 |
Pan troglodytes (chimpanzee) | TSR1 | XP_003315339.1 |
TSR1 | XP_001086730.1 | |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP009438 | XP_307850.4 |
Kluyveromyces lactis | KLLA0E05149g | XP_454177.1 |
Neurospora crassa | NCU01503 | XP_956952.1 |
Canis lupus familiaris (dog) | TSR1 | XP_548321.4 |
Gallus gallus (chicken) | LOC100857289 | XP_004946616.1 |
Drosophila melanogaster (fruit fly) | CG7338 | NP_649304.1 |
Bos taurus (cattle) | TSR1 | NP_001095403.1 |
Danio rerio (zebrafish) | tsr1 | NP_001032447.2 |
Eremothecium gossypii | AGOS_AER051C | NP_984911.1 |
Oryza sativa (rice) | Os11g0298400 | NP_001067728.1 |
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)
RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)
The zebrafish gene map defines ancestral vertebrate chromosomes.
Woods IG, Wilson C, Friedlander B, Chang P, Reyes DK, Nix R, Kelly PD, Chu F, Postlethwait JH, Talbot WS
Genome research15(9)1307-14(2005 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following tsr1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the tsr1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa02619 | |
Clone ID Related Accession (Same CDS sequence) | NM_001037370.2 | |
Accession Version | NM_001037370.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2469bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-07 | |
Organism | Danio rerio(zebrafish) | |
Product | pre-rRNA-processing protein TSR1 homolog | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CT027805.6. On Jul 23, 2010 this sequence version replaced NM_001037370.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCTGCAG GAGGAGAGCA ACAGCAGCAG ACACACAGAC CTGGAGTTTA TAAACAGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001032447.2 |
CDS | 28..2496 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001037370.2 |
1 | ATGGCTGCAG GAGGAGAGCA ACAGCAGCAG ACACACAGAC CTGGAGTTTA TAAACAGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa20465 | |
Clone ID Related Accession (Same CDS sequence) | XM_005157568.3 , XM_005157568.4 | |
Accession Version | XM_005157568.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2511bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | pre-rRNA-processing protein TSR1 homolog isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007126.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005157568.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTGCAG GAGGAGAGCA ACAGCAGCAG ACACACAGAC CTGGAGTTTA TAAACAGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005157625.1 |
CDS | 52..2562 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005157568.3 |
1 | ATGGCTGCAG GAGGAGAGCA ACAGCAGCAG ACACACAGAC CTGGAGTTTA TAAACAGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa20465 | |
Clone ID Related Accession (Same CDS sequence) | XM_005157568.3 , XM_005157568.4 | |
Accession Version | XM_005157568.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2511bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | pre-rRNA-processing protein TSR1 homolog isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007126.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005157568.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTGCAG GAGGAGAGCA ACAGCAGCAG ACACACAGAC CTGGAGTTTA TAAACAGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005157625.1 |
CDS | 42..2552 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005157568.4 |
1 | ATGGCTGCAG GAGGAGAGCA ACAGCAGCAG ACACACAGAC CTGGAGTTTA TAAACAGAAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. |
RFX transcription factors are essential for hearing in mice. |
The zebrafish gene map defines ancestral vertebrate chromosomes. |