Gene Symbol | YIPF1 |
Entrez Gene ID | 54432 |
Full Name | Yip1 domain family member 1 |
Synonyms | DJ167A19.1,FinGER1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Homo sapiens(human) |
Genome | |
Disorder MIM: |
ORF » Species Summary » Homo sapiens » YIPF1 cDNA ORF clone
Gene Symbol | YIPF1 |
Entrez Gene ID | 54432 |
Full Name | Yip1 domain family member 1 |
Synonyms | DJ167A19.1,FinGER1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Homo sapiens(human) |
Genome | |
Disorder MIM: |
mRNA | Protein | Name |
---|---|---|
XM_017001499.2 | XP_016856988.1 | protein YIPF1 isoform X1 |
XM_017001500.1 | XP_016856989.1 | protein YIPF1 isoform X2 |
XM_017001501.1 | XP_016856990.1 | protein YIPF1 isoform X2 |
XM_017001499.1 | XP_016856988.1 | protein YIPF1 isoform X1 |
NM_018982.5 | NP_061855.1 | protein YIPF1 |
NM_018982.4 | NP_061855.1 | protein YIPF1 |
Canis lupus familiaris (dog) | YIPF1 | XP_852598.1 |
Magnaporthe oryzae (rice blast fungus) | MGG_06045 | XP_003711896.1 |
Homo sapiens (human) | YIPF1 | NP_061855.1 |
Gallus gallus (chicken) | YIPF1 | NP_001264536.1 |
Xenopus tropicalis (tropical clawed frog) | yipf1 | XP_002931506.1 |
Bos taurus (cattle) | YIPF1 | NP_001193241.1 |
Mus musculus (house mouse) | Yipf1 | NP_663525.1 |
Danio rerio (zebrafish) | yipf1 | NP_001003991.1 |
Neurospora crassa | NCU05276 | XP_961913.1 |
Arabidopsis thaliana (thale cress) | AT5G27490 | NP_198101.2 |
Oryza sativa (rice) | Os01g0610500 | NP_001043545.1 |
Pan troglodytes (chimpanzee) | YIPF1 | XP_001148917.1 |
Rattus norvegicus (Norway rat) | Yipf1 | NP_955415.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP006951 | XP_308805.4 |
Caenorhabditis elegans (roundworm) | Y25C1A.7 | NP_494438.2 |
Arabidopsis thaliana (thale cress) | AT3G05280 | NP_187179.2 |
LOC714632 | XP_001112998.1 | |
Drosophila melanogaster (fruit fly) | CG4645 | NP_572841.1 |
Schizosaccharomyces pombe (fission yeast) | SPAC227.06 | NP_592960.1 |
Architecture of the human interactome defines protein communities and disease networks.
Huttlin EL, Bruckner RJ, Paulo JA, Cannon JR, Ting L, Baltier K, Colby G, Gebreab F, Gygi MP, Parzen H, Szpyt J, Tam S, Zarraga G, Pontano-Vaites L, Swarup S, White AE, Schweppe DK, Rad R, Erickson BK, Obar RA, Guruharsha KG, Li K, Artavanis-Tsakonas S, Gygi SP, Harper JW
Nature545(7655)505-509(2017 05)
YIPF1, YIPF2, and YIPF6 are medial-/trans-Golgi and trans-Golgi network-localized Yip domain family proteins, which play a role in the Golgi reassembly and glycan synthesis.
Soonthornsit J, Sakai N, Sasaki Y, Watanabe R, Osako S, Nakamura N
Experimental cell research353(2)100-108(2017 04)
Genetic polymorphisms of the human PNPLA3 gene are strongly associated with severity of non-alcoholic fatty liver disease in Japanese.
Kawaguchi T, Sumida Y, Umemura A, Matsuo K, Takahashi M, Takamura T, Yasui K, Saibara T, Hashimoto E, Kawanaka M, Watanabe S, Kawata S, Imai Y, Kokubo M, Shima T, Park H, Tanaka H, Tajima K, Yamada R, Matsuda F, Okanoue T,
PloS one7(6)e38322(2012)
Image-based genome-wide siRNA screen identifies selective autophagy factors.
Orvedahl A, Sumpter R Jr, Xiao G, Ng A, Zou Z, Tang Y, Narimatsu M, Gilpin C, Sun Q, Roth M, Forst CV, Wrana JL, Zhang YE, Luby-Phelps K, Xavier RJ, Xie Y, Levine B
Nature480(7375)113-7(2011 Dec)
High-content screening microscopy identifies novel proteins with a putative role in secretory membrane traffic.
Starkuviene V, Liebel U, Simpson JC, Erfle H, Poustka A, Wiemann S, Pepperkok R
Genome research14(10A)1948-56(2004 Oct)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Knockdown of YIPF1 and YIPF2, but not that of YIPF6, also reduced intracellular glycans in HT-29 cells. Thus, we confirmed that YIPF1, YIPF2, and YIPF6 play a significant role in supporting normal glycan synthesis
Title: YIPF1, YIPF2, and YIPF6 are medial-/trans-Golgi and trans-Golgi network-localized Yip domain family proteins, which play a role in the Golgi reassembly and glycan synthesis.
The following YIPF1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the YIPF1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
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CloneID | OHu07655 | |
Clone ID Related Accession (Same CDS sequence) | XM_017001499.2 , XM_017001499.1 , NM_018982.5 , NM_018982.4 | |
Accession Version | NM_018982.5 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 921bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-09 | |
Organism | Homo sapiens(human) | |
Product | protein YIPF1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BI757212.1, AL031427.15, AL391003.15 and AL596480.1. On Nov 23, 2018 this sequence version replaced NM_018982.4. Transcript Variant: This variant (1) is the protein-coding transcript. ##Evidence-Data-START## Transcript exon combination :: SRR1803615.139854.1, SRR3476690.730969.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA1965299, SAMEA1966682 [ECO:0000350] ##Evidence-Data-END## ##RefSeq-Attributes-START## MANE Ensembl match :: ENST00000072644.7/ ENSP00000072644.1 RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## COMPLETENESS: full length. |
1 | ATGGCAGCAG TAGATGACTT GCAATTTGAA GAATTTGGCA ATGCAGCCAC TTCTCTGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_061855.1 |
CDS | 355..1275 |
Translation |
Target ORF information:
Target ORF information:
|
NM_018982.5 |
1 | ATGGCAGCAG TAGATGACTT GCAATTTGAA GAATTTGGCA ATGCAGCCAC TTCTCTGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu07655 | |
Clone ID Related Accession (Same CDS sequence) | XM_017001499.2 , XM_017001499.1 , NM_018982.5 , NM_018982.4 | |
Accession Version | NM_018982.4 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 921bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-10-01 | |
Organism | Homo sapiens(human) | |
Product | protein YIPF1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CN308348.1, BI757212.1, AL031427.15, AL391003.15 and AL596480.1. On Sep 25, 2010 this sequence version replaced NM_018982.3. Transcript Variant: This variant (1) is the protein-coding transcript. ##Evidence-Data-START## Transcript exon combination :: SRR1803615.139854.1, SRR1803613.236106.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA1965299, SAMEA1966682 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGGCAGCAG TAGATGACTT GCAATTTGAA GAATTTGGCA ATGCAGCCAC TTCTCTGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_061855.1 |
CDS | 372..1292 |
Translation |
Target ORF information:
Target ORF information:
|
NM_018982.4 |
1 | ATGGCAGCAG TAGATGACTT GCAATTTGAA GAATTTGGCA ATGCAGCCAC TTCTCTGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu07655 | |
Clone ID Related Accession (Same CDS sequence) | XM_017001499.2 , XM_017001499.1 , NM_018982.5 , NM_018982.4 | |
Accession Version | XM_017001499.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 921bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-25 | |
Organism | Homo sapiens(human) | |
Product | protein YIPF1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000001.11) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 26, 2018 this sequence version replaced XM_017001499.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Homo sapiens Annotation Release 109 Annotation Version :: 109 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCAGCAG TAGATGACTT GCAATTTGAA GAATTTGGCA ATGCAGCCAC TTCTCTGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_016856988.1 |
CDS | 137..1057 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017001499.2 |
1 | ATGGCAGCAG TAGATGACTT GCAATTTGAA GAATTTGGCA ATGCAGCCAC TTCTCTGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu07655 | |
Clone ID Related Accession (Same CDS sequence) | XM_017001499.2 , XM_017001499.1 , NM_018982.5 , NM_018982.4 | |
Accession Version | XM_017001499.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 921bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-05 | |
Organism | Homo sapiens(human) | |
Product | protein YIPF1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000001.11) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCAGCAG TAGATGACTT GCAATTTGAA GAATTTGGCA ATGCAGCCAC TTCTCTGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_016856988.1 |
CDS | 130..1050 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017001499.1 |
1 | ATGGCAGCAG TAGATGACTT GCAATTTGAA GAATTTGGCA ATGCAGCCAC TTCTCTGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu68299 | |
Clone ID Related Accession (Same CDS sequence) | XM_017001500.1 , XM_017001501.1 | |
Accession Version | XM_017001500.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 744bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-25 | |
Organism | Homo sapiens(human) | |
Product | protein YIPF1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000001.11) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Homo sapiens Annotation Release 109 Annotation Version :: 109 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACTTGCA ATTTGAAGTT ACTTGCTGGA CAGAAGAAAA GCTCCCCCTT CTGGACATTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_016856989.1 |
CDS | 370..1113 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017001500.1 |
1 | ATGACTTGCA ATTTGAAGTT ACTTGCTGGA CAGAAGAAAA GCTCCCCCTT CTGGACATTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu68299 | |
Clone ID Related Accession (Same CDS sequence) | XM_017001500.1 , XM_017001501.1 | |
Accession Version | XM_017001501.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 744bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-03-25 | |
Organism | Homo sapiens(human) | |
Product | protein YIPF1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000001.11) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Homo sapiens Annotation Release 109 Annotation Version :: 109 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACTTGCA ATTTGAAGTT ACTTGCTGGA CAGAAGAAAA GCTCCCCCTT CTGGACATTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_016856990.1 |
CDS | 151..894 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017001501.1 |
1 | ATGACTTGCA ATTTGAAGTT ACTTGCTGGA CAGAAGAAAA GCTCCCCCTT CTGGACATTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Architecture of the human interactome defines protein communities and disease networks. |
YIPF1, YIPF2, and YIPF6 are medial-/trans-Golgi and trans-Golgi network-localized Yip domain family proteins, which play a role in the Golgi reassembly and glycan synthesis. |
Genetic polymorphisms of the human PNPLA3 gene are strongly associated with severity of non-alcoholic fatty liver disease in Japanese. |
Image-based genome-wide siRNA screen identifies selective autophagy factors. |
High-content screening microscopy identifies novel proteins with a putative role in secretory membrane traffic. |