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chia cDNA ORF clone, Xenopus tropicalis(tropical clawed frog)

Summary

Gene Symbol chia
Entrez Gene ID 548404
Full Name chitinase, acidic
Synonyms chia1
General protein information
Preferred Names

chitinase, acidic

Names

acidic mammalian chitinase
Gene Type protein-coding
Organism Xenopus tropicalis(tropical clawed frog)

Reference Sequences (RefSeq)

mRNA and Protein(s)

mRNA Protein Name
XM_012961552.2 XP_012817006.1 acidic mammalian chitinase isoform X1
NM_001199560.1 NP_001186489.1 acidic mammalian chitinase precursor

Pathways from BioSystems


Homologies


Danio rerio (zebrafish) zgc:65788 NP_955897.2
Danio rerio (zebrafish) chia.4 NP_956740.1
Magnaporthe oryzae (rice blast fungus) MGG_01247 XP_003714154.1
Bos taurus (cattle) CHIA NP_777124.1
Gallus gallus (chicken) CHIA NP_989760.1
Danio rerio (zebrafish) chia.3 NP_998378.1
Homo sapiens (human) CHIA NP_970615.2
Xenopus tropicalis (tropical clawed frog) chia NP_001186489.1
CHIA XP_001104487.1
Canis lupus familiaris (dog) CHIA XP_537030.3
Mus musculus (house mouse) Chia1 NP_075675.2
Rattus norvegicus (Norway rat) Chia NP_997469.1
Danio rerio (zebrafish) zgc:173927 NP_001103511.1
Neurospora crassa NCU03209 XP_965309.2

Gene Ontology


Bibliography

Related articles in PubMed

New paralogues and revised time line in the expansion of the vertebrate GH18 family.
Hussain M, Wilson JB
Journal of molecular evolution76(4)240-60(2013 Apr)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following chia gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the chia cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OXa23398 NM_001199560.1
Latest version!		 Xenopus tropicalis chitinase, acidic (chia), mRNA. pcDNA3.1-C-(k)DYK or customized vector 7-9 $258.30
$369.00
OXa27357 XM_012961552.2
Latest version!		 Xenopus tropicalis chitinase, acidic (chia), transcript variant X1, mRNA. pcDNA3.1-C-(k)DYK or customized vector 7-9 $258.30
$369.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)


CloneID OXa23398
Clone ID Related Accession (Same CDS sequence) NM_001199560.1
Accession Version NM_001199560.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 1449bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2019-12-21
Organism Xenopus tropicalis(tropical clawed frog)
Product acidic mammalian chitinase precursor
Comment Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CF523087.1 and BC090382.1. On Dec 10, 2010 this sequence version replaced XM_002932975.1. ##Evidence-Data-START## Transcript exon combination :: BC090382.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00028317, SAMD00028318 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
ATGGCAAAAC TTATCCTCCT CGTTGGGTTG GCGCTAGTGT TAAATGCTCA GCTTGGCTCC 
GCCTATGAGC TGACATGTTA CTTCACCAAT TGGGCCCAAT ACAGACCAGG GCTAGGAAAG 
TTCAAGCCTG ATAACATTGA TCCATGCCTT TGTACTCACC TGATCTATGC CTTTGCCGGA 
ATGTCCAATA ACCAGATCAC CACGATTGAA TGGAATGATG TCACTCTGTA CAGCTCCTTC 
CAAAATCTAA AGAACCAGAA TGGTAATTTG AAAACACTTC TGGCAATTGG AGGTTGGAAC 
TTTGGAACTG CACCGTTCAC TGCCATGGTT GCCACTGCTC AAAGCCGTCA GACATTTATA 
TCTTCTGTGA TCAAATTCCT GCGTCAATAT GGATTTGATG GTCTAGACTT TGATTGGGAA 
TATCCAGGCT CCAGAGGCAG CCCTCCTCAG GACAAGCAGC TCTTTACCAC ATTGGTTCAG 
GAAATGTTAG CAGCTTTTGA AGCAGAAGCT TCACAATCCA ACAAGCCTAG ACTAATGGTG 
ACCGCTGCAG TGGCTGCTGG TATCTCCAAC ATCGAATCTG GTTACCAGAT TCCCCAGCTT 
TCACAGGCTC TAGATTACAT CCATGTTATG ACTTATGACC TGCACGGTTC CTGGGAAGGA 
TACACTGGAG AAAACAGCCC TCTGTACACT AACCCATCTG CGACTGGATA TAACGCTTAC 
TTGAATGTTG ACTATGTCAT GAATTACTGG CTGAACAATG GTGCTCCTGC TTCAAAGCTC 
ATTGTTGGAT TCCCAACCTA TGGACACACG TTTATCCTCA GTAACCCATC CAACAATGGC 
ATCGGTGCCC CAACTTCTGG GAATGGACCT GCTGGACCTT ACACCAGACA AGCTGGATTC 
TGGGCCTATT ATGAGATCTG CACCTTCCTG AAGAATGGAG CAACCAACCT TTGGTCTTCT 
GCTGAAGACG TACCCTATGC ATATCAAGGC AGTGAATGGT TGGGCTATGA TAACGAGAAG 
AGCTTCCAAA TAAAGGCTGA ATGGCTAATG AAAAATAATC TTGGAGGTGC TATGGTTTGG 
GCTATTGATC TGGATGATTT CACTGGGACT TTCTGTAATC AGGGAAAGTT CCCTCTGATT 
AACACACTGA AGAATACTCT TGGTGTTCAA GCATCCGGCT GTACCCCTCC TGCTACTCCT 
GTTGCTCCAG TAACAGCTGC TCCAGCAACT GTACCTAGTG GCAGTGGCTC TGGAAGCAGT 
GGATCTGGTA GTAGCTCTGG TGGAAGCTCA GGTGGCAGTG GATTCTGTGC TGGAAAAGCT 
AGTGGTTTGT ACCCAGTGGC TGGAAACACC AATGCCTTTT GGCATTGCTT GAACGGAATT 
ACCTACCAGC AGCACTGCCA AACTGGCCTT GTATTTGATC CAAGCTGCGA GTGCTGTAAT 
TGGCCATGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_001186489.1
CDS2..1450
Translation

Target ORF information:

RefSeq Version NM_001199560.1
Organism Xenopus tropicalis(tropical clawed frog)
Definition Xenopus tropicalis chitinase, acidic (chia), mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 NM_001199560.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
ATGGCAAAAC TTATCCTCCT CGTTGGGTTG GCGCTAGTGT TAAATGCTCA GCTTGGCTCC 
GCCTATGAGC TGACATGTTA CTTCACCAAT TGGGCCCAAT ACAGACCAGG GCTAGGAAAG 
TTCAAGCCTG ATAACATTGA TCCATGCCTT TGTACTCACC TGATCTATGC CTTTGCCGGA 
ATGTCCAATA ACCAGATCAC CACGATTGAA TGGAATGATG TCACTCTGTA CAGCTCCTTC 
CAAAATCTAA AGAACCAGAA TGGTAATTTG AAAACACTTC TGGCAATTGG AGGTTGGAAC 
TTTGGAACTG CACCGTTCAC TGCCATGGTT GCCACTGCTC AAAGCCGTCA GACATTTATA 
TCTTCTGTGA TCAAATTCCT GCGTCAATAT GGATTTGATG GTCTAGACTT TGATTGGGAA 
TATCCAGGCT CCAGAGGCAG CCCTCCTCAG GACAAGCAGC TCTTTACCAC ATTGGTTCAG 
GAAATGTTAG CAGCTTTTGA AGCAGAAGCT TCACAATCCA ACAAGCCTAG ACTAATGGTG 
ACCGCTGCAG TGGCTGCTGG TATCTCCAAC ATCGAATCTG GTTACCAGAT TCCCCAGCTT 
TCACAGGCTC TAGATTACAT CCATGTTATG ACTTATGACC TGCACGGTTC CTGGGAAGGA 
TACACTGGAG AAAACAGCCC TCTGTACACT AACCCATCTG CGACTGGATA TAACGCTTAC 
TTGAATGTTG ACTATGTCAT GAATTACTGG CTGAACAATG GTGCTCCTGC TTCAAAGCTC 
ATTGTTGGAT TCCCAACCTA TGGACACACG TTTATCCTCA GTAACCCATC CAACAATGGC 
ATCGGTGCCC CAACTTCTGG GAATGGACCT GCTGGACCTT ACACCAGACA AGCTGGATTC 
TGGGCCTATT ATGAGATCTG CACCTTCCTG AAGAATGGAG CAACCAACCT TTGGTCTTCT 
GCTGAAGACG TACCCTATGC ATATCAAGGC AGTGAATGGT TGGGCTATGA TAACGAGAAG 
AGCTTCCAAA TAAAGGCTGA ATGGCTAATG AAAAATAATC TTGGAGGTGC TATGGTTTGG 
GCTATTGATC TGGATGATTT CACTGGGACT TTCTGTAATC AGGGAAAGTT CCCTCTGATT 
AACACACTGA AGAATACTCT TGGTGTTCAA GCATCCGGCT GTACCCCTCC TGCTACTCCT 
GTTGCTCCAG TAACAGCTGC TCCAGCAACT GTACCTAGTG GCAGTGGCTC TGGAAGCAGT 
GGATCTGGTA GTAGCTCTGG TGGAAGCTCA GGTGGCAGTG GATTCTGTGC TGGAAAAGCT 
AGTGGTTTGT ACCCAGTGGC TGGAAACACC AATGCCTTTT GGCATTGCTT GAACGGAATT 
ACCTACCAGC AGCACTGCCA AACTGGCCTT GTATTTGATC CAAGCTGCGA GTGCTGTAAT 
TGGCCATGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OXa27357
Clone ID Related Accession (Same CDS sequence) XM_012961552.2
Accession Version XM_012961552.2 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 1269bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2016-09-07
Organism Xenopus tropicalis(tropical clawed frog)
Product acidic mammalian chitinase isoform X1
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030678.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2016 this sequence version replaced XM_012961552.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Xenopus tropicalis Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
ATGTCCAATA ACCAGATCAC CACGATTGAA TGGAATGATG TCACTCTGTA CAGCTCCTTC 
CAAAATCTAA AGAACCAGAA TGGTAATTTG AAAACACTTC TGGCAATTGG AGGTTGGAAC 
TTTGGAACTG CACCGTTCAC TGCCATGGTT GCCACTGCTC AAAGCCGTCA GACATTTATA 
TCTTCTGTGA TCAAATTCCT GCGTCAATAT GGATTTGATG GTCTAGACTT TGATTGGGAA 
TATCCAGGCT CCAGAGGCAG CCCTCCTCAG GACAAGCAGC TCTTTACCAC ATTGGTTCAG 
GAAATGTTAG CAGCTTTTGA AGCAGAAGCT TCACAATCCA ACAAGCCTAG ACTAATGGTG 
ACCGCTGCAG TGGCTGCTGG TATCTCCAAC ATCGAATCTG GTTACCAGAT TCCCCAGCTT 
TCACAGGCTC TAGATTACAT CCATGTTATG ACTTATGACC TGCACGGTTC CTGGGAAGGA 
TACACTGGAG AAAACAGCCC TCTGTACACT AACCCATCTG CGACTGGATA TAACGCTTAC 
TTGAATGTTG ACTATGTCAT GAATTACTGG CTGAACAATG GTGCTCCTGC TTCAAAGCTC 
ATTGTTGGAT TCCCAACCTA TGGACACACG TTTATCCTCA GTAACCCATC CAACAATGGC 
ATCGGTGCCC CAACTTCTGG GAATGGACCT GCTGGACCTT ACACCAGACA AGCTGGATTC 
TGGGCCTATT ATGAGATCTG CACCTTCCTG AAGAATGGAG CAACCAACCT TTGGTCTTCT 
GCTGAAGACG TACCCTATGC ATATCAAGGC AGTGAATGGT TGGGCTATGA TAACGAGAAG 
AGCTTCCAAA TAAAGGCTGA ATGGCTAATG AAAAATAATC TTGGAGGTGC TATGGTTTGG 
GCTATTGATC TGGATGATTT CACTGGGACT TTCTGTAATC AGGGAAAGTT CCCTCTGATT 
AACACACTGA AGAATACTCT TGGTGTTCAA GCATCCGGCT GTACCCCTCC TGCTACTCCT 
GTTGCTCCAG TAACAGCTGC TCCAGCAACT GTACCTAGTG GCAGTGGCTC TGGAAGCAGT 
GGATCTGGTA GTAGCTCTGG TGGAAGCTCA GGTGGCAGTG GATTCTGTGC TGGAAAAGCT 
AGTGGTTTGT ACCCAGTGGC TGGAAACACC AATGCCTTTT GGCATTGCTT GAACGGAATT 
ACCTACCAGC AGCACTGCCA AACTGGCCTT GTATTTGATC CAAGCTGCGA GTGCTGTAAT 
TGGCCATGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_012817006.1
CDS221..1489
Translation

Target ORF information:

RefSeq Version XM_012961552.2
Organism Xenopus tropicalis(tropical clawed frog)
Definition Xenopus tropicalis chitinase, acidic (chia), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_012961552.2

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
ATGTCCAATA ACCAGATCAC CACGATTGAA TGGAATGATG TCACTCTGTA CAGCTCCTTC 
CAAAATCTAA AGAACCAGAA TGGTAATTTG AAAACACTTC TGGCAATTGG AGGTTGGAAC 
TTTGGAACTG CACCGTTCAC TGCCATGGTT GCCACTGCTC AAAGCCGTCA GACATTTATA 
TCTTCTGTGA TCAAATTCCT GCGTCAATAT GGATTTGATG GTCTAGACTT TGATTGGGAA 
TATCCAGGCT CCAGAGGCAG CCCTCCTCAG GACAAGCAGC TCTTTACCAC ATTGGTTCAG 
GAAATGTTAG CAGCTTTTGA AGCAGAAGCT TCACAATCCA ACAAGCCTAG ACTAATGGTG 
ACCGCTGCAG TGGCTGCTGG TATCTCCAAC ATCGAATCTG GTTACCAGAT TCCCCAGCTT 
TCACAGGCTC TAGATTACAT CCATGTTATG ACTTATGACC TGCACGGTTC CTGGGAAGGA 
TACACTGGAG AAAACAGCCC TCTGTACACT AACCCATCTG CGACTGGATA TAACGCTTAC 
TTGAATGTTG ACTATGTCAT GAATTACTGG CTGAACAATG GTGCTCCTGC TTCAAAGCTC 
ATTGTTGGAT TCCCAACCTA TGGACACACG TTTATCCTCA GTAACCCATC CAACAATGGC 
ATCGGTGCCC CAACTTCTGG GAATGGACCT GCTGGACCTT ACACCAGACA AGCTGGATTC 
TGGGCCTATT ATGAGATCTG CACCTTCCTG AAGAATGGAG CAACCAACCT TTGGTCTTCT 
GCTGAAGACG TACCCTATGC ATATCAAGGC AGTGAATGGT TGGGCTATGA TAACGAGAAG 
AGCTTCCAAA TAAAGGCTGA ATGGCTAATG AAAAATAATC TTGGAGGTGC TATGGTTTGG 
GCTATTGATC TGGATGATTT CACTGGGACT TTCTGTAATC AGGGAAAGTT CCCTCTGATT 
AACACACTGA AGAATACTCT TGGTGTTCAA GCATCCGGCT GTACCCCTCC TGCTACTCCT 
GTTGCTCCAG TAACAGCTGC TCCAGCAACT GTACCTAGTG GCAGTGGCTC TGGAAGCAGT 
GGATCTGGTA GTAGCTCTGG TGGAAGCTCA GGTGGCAGTG GATTCTGTGC TGGAAAAGCT 
AGTGGTTTGT ACCCAGTGGC TGGAAACACC AATGCCTTTT GGCATTGCTT GAACGGAATT 
ACCTACCAGC AGCACTGCCA AACTGGCCTT GTATTTGATC CAAGCTGCGA GTGCTGTAAT 
TGGCCATGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

PubMed

book

New paralogues and revised time line in the expansion of the vertebrate GH18 family.
Journal of molecular evolution76(4)240-60(2013 Apr)
Hussain M,Wilson JB