Gene Symbol |
chia |
Entrez Gene ID |
548404 |
Full Name |
chitinase, acidic |
Synonyms |
chia1 |
General protein information |
- Preferred Names
chitinase, acidic
Names
acidic mammalian chitinase
|
Gene Type |
protein-coding |
Organism |
Xenopus tropicalis(tropical clawed frog) |
mRNA and Protein(s)
mRNA |
Protein |
Name |
XM_012961552.2 |
XP_012817006.1 |
acidic mammalian chitinase isoform X1 |
NM_001199560.1 |
NP_001186489.1 |
acidic mammalian chitinase precursor |
Danio rerio (zebrafish) |
zgc:65788 |
NP_955897.2 |
Danio rerio (zebrafish) |
chia.4 |
NP_956740.1 |
Magnaporthe oryzae (rice blast fungus) |
MGG_01247 |
XP_003714154.1 |
Bos taurus (cattle) |
CHIA |
NP_777124.1 |
Gallus gallus (chicken) |
CHIA |
NP_989760.1 |
Danio rerio (zebrafish) |
chia.3 |
NP_998378.1 |
Homo sapiens (human) |
CHIA |
NP_970615.2 |
Xenopus tropicalis (tropical clawed frog) |
chia |
NP_001186489.1 |
|
CHIA |
XP_001104487.1 |
Canis lupus familiaris (dog) |
CHIA |
XP_537030.3 |
Mus musculus (house mouse) |
Chia1 |
NP_075675.2 |
Rattus norvegicus (Norway rat) |
Chia |
NP_997469.1 |
Danio rerio (zebrafish) |
zgc:173927 |
NP_001103511.1 |
Neurospora crassa |
NCU03209 |
XP_965309.2 |
Related articles in PubMed
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following chia gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the chia cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID |
OXa23398 |
Clone ID Related Accession (Same CDS sequence) |
NM_001199560.1
|
Accession Version |
NM_001199560.1 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 1449bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2019-12-21 |
Organism |
Xenopus tropicalis(tropical clawed frog) |
Product |
acidic mammalian chitinase precursor |
Comment |
Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CF523087.1 and BC090382.1. On Dec 10, 2010 this sequence version replaced XM_002932975.1.
##Evidence-Data-START##
Transcript exon combination :: BC090382.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns SAMD00028317, SAMD00028318 [ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441
| ATGGCAAAAC TTATCCTCCT CGTTGGGTTG GCGCTAGTGT TAAATGCTCA GCTTGGCTCC GCCTATGAGC TGACATGTTA CTTCACCAAT TGGGCCCAAT ACAGACCAGG GCTAGGAAAG TTCAAGCCTG ATAACATTGA TCCATGCCTT TGTACTCACC TGATCTATGC CTTTGCCGGA ATGTCCAATA ACCAGATCAC CACGATTGAA TGGAATGATG TCACTCTGTA CAGCTCCTTC CAAAATCTAA AGAACCAGAA TGGTAATTTG AAAACACTTC TGGCAATTGG AGGTTGGAAC TTTGGAACTG CACCGTTCAC TGCCATGGTT GCCACTGCTC AAAGCCGTCA GACATTTATA TCTTCTGTGA TCAAATTCCT GCGTCAATAT GGATTTGATG GTCTAGACTT TGATTGGGAA TATCCAGGCT CCAGAGGCAG CCCTCCTCAG GACAAGCAGC TCTTTACCAC ATTGGTTCAG GAAATGTTAG CAGCTTTTGA AGCAGAAGCT TCACAATCCA ACAAGCCTAG ACTAATGGTG ACCGCTGCAG TGGCTGCTGG TATCTCCAAC ATCGAATCTG GTTACCAGAT TCCCCAGCTT TCACAGGCTC TAGATTACAT CCATGTTATG ACTTATGACC TGCACGGTTC CTGGGAAGGA TACACTGGAG AAAACAGCCC TCTGTACACT AACCCATCTG CGACTGGATA TAACGCTTAC TTGAATGTTG ACTATGTCAT GAATTACTGG CTGAACAATG GTGCTCCTGC TTCAAAGCTC ATTGTTGGAT TCCCAACCTA TGGACACACG TTTATCCTCA GTAACCCATC CAACAATGGC ATCGGTGCCC CAACTTCTGG GAATGGACCT GCTGGACCTT ACACCAGACA AGCTGGATTC TGGGCCTATT ATGAGATCTG CACCTTCCTG AAGAATGGAG CAACCAACCT TTGGTCTTCT GCTGAAGACG TACCCTATGC ATATCAAGGC AGTGAATGGT TGGGCTATGA TAACGAGAAG AGCTTCCAAA TAAAGGCTGA ATGGCTAATG AAAAATAATC TTGGAGGTGC TATGGTTTGG GCTATTGATC TGGATGATTT CACTGGGACT TTCTGTAATC AGGGAAAGTT CCCTCTGATT AACACACTGA AGAATACTCT TGGTGTTCAA GCATCCGGCT GTACCCCTCC TGCTACTCCT GTTGCTCCAG TAACAGCTGC TCCAGCAACT GTACCTAGTG GCAGTGGCTC TGGAAGCAGT GGATCTGGTA GTAGCTCTGG TGGAAGCTCA GGTGGCAGTG GATTCTGTGC TGGAAAAGCT AGTGGTTTGT ACCCAGTGGC TGGAAACACC AATGCCTTTT GGCATTGCTT GAACGGAATT ACCTACCAGC AGCACTGCCA AACTGGCCTT GTATTTGATC CAAGCTGCGA GTGCTGTAAT TGGCCATGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
NP_001186489.1 |
CDS | 2..1450 |
Translation | |
Target ORF information:
RefSeq Version | NM_001199560.1 |
Organism | Xenopus tropicalis(tropical clawed frog) |
Definition | Xenopus tropicalis chitinase, acidic (chia), mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
NM_001199560.1 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441
| ATGGCAAAAC TTATCCTCCT CGTTGGGTTG GCGCTAGTGT TAAATGCTCA GCTTGGCTCC GCCTATGAGC TGACATGTTA CTTCACCAAT TGGGCCCAAT ACAGACCAGG GCTAGGAAAG TTCAAGCCTG ATAACATTGA TCCATGCCTT TGTACTCACC TGATCTATGC CTTTGCCGGA ATGTCCAATA ACCAGATCAC CACGATTGAA TGGAATGATG TCACTCTGTA CAGCTCCTTC CAAAATCTAA AGAACCAGAA TGGTAATTTG AAAACACTTC TGGCAATTGG AGGTTGGAAC TTTGGAACTG CACCGTTCAC TGCCATGGTT GCCACTGCTC AAAGCCGTCA GACATTTATA TCTTCTGTGA TCAAATTCCT GCGTCAATAT GGATTTGATG GTCTAGACTT TGATTGGGAA TATCCAGGCT CCAGAGGCAG CCCTCCTCAG GACAAGCAGC TCTTTACCAC ATTGGTTCAG GAAATGTTAG CAGCTTTTGA AGCAGAAGCT TCACAATCCA ACAAGCCTAG ACTAATGGTG ACCGCTGCAG TGGCTGCTGG TATCTCCAAC ATCGAATCTG GTTACCAGAT TCCCCAGCTT TCACAGGCTC TAGATTACAT CCATGTTATG ACTTATGACC TGCACGGTTC CTGGGAAGGA TACACTGGAG AAAACAGCCC TCTGTACACT AACCCATCTG CGACTGGATA TAACGCTTAC TTGAATGTTG ACTATGTCAT GAATTACTGG CTGAACAATG GTGCTCCTGC TTCAAAGCTC ATTGTTGGAT TCCCAACCTA TGGACACACG TTTATCCTCA GTAACCCATC CAACAATGGC ATCGGTGCCC CAACTTCTGG GAATGGACCT GCTGGACCTT ACACCAGACA AGCTGGATTC TGGGCCTATT ATGAGATCTG CACCTTCCTG AAGAATGGAG CAACCAACCT TTGGTCTTCT GCTGAAGACG TACCCTATGC ATATCAAGGC AGTGAATGGT TGGGCTATGA TAACGAGAAG AGCTTCCAAA TAAAGGCTGA ATGGCTAATG AAAAATAATC TTGGAGGTGC TATGGTTTGG GCTATTGATC TGGATGATTT CACTGGGACT TTCTGTAATC AGGGAAAGTT CCCTCTGATT AACACACTGA AGAATACTCT TGGTGTTCAA GCATCCGGCT GTACCCCTCC TGCTACTCCT GTTGCTCCAG TAACAGCTGC TCCAGCAACT GTACCTAGTG GCAGTGGCTC TGGAAGCAGT GGATCTGGTA GTAGCTCTGG TGGAAGCTCA GGTGGCAGTG GATTCTGTGC TGGAAAAGCT AGTGGTTTGT ACCCAGTGGC TGGAAACACC AATGCCTTTT GGCATTGCTT GAACGGAATT ACCTACCAGC AGCACTGCCA AACTGGCCTT GTATTTGATC CAAGCTGCGA GTGCTGTAAT TGGCCATGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OXa27357 |
Clone ID Related Accession (Same CDS sequence) |
XM_012961552.2
|
Accession Version |
XM_012961552.2 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 1269bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2016-09-07 |
Organism |
Xenopus tropicalis(tropical clawed frog) |
Product |
acidic mammalian chitinase isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030678.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
On Sep 8, 2016 this sequence version replaced XM_012961552.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Xenopus tropicalis Annotation Release 103
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261
| ATGTCCAATA ACCAGATCAC CACGATTGAA TGGAATGATG TCACTCTGTA CAGCTCCTTC CAAAATCTAA AGAACCAGAA TGGTAATTTG AAAACACTTC TGGCAATTGG AGGTTGGAAC TTTGGAACTG CACCGTTCAC TGCCATGGTT GCCACTGCTC AAAGCCGTCA GACATTTATA TCTTCTGTGA TCAAATTCCT GCGTCAATAT GGATTTGATG GTCTAGACTT TGATTGGGAA TATCCAGGCT CCAGAGGCAG CCCTCCTCAG GACAAGCAGC TCTTTACCAC ATTGGTTCAG GAAATGTTAG CAGCTTTTGA AGCAGAAGCT TCACAATCCA ACAAGCCTAG ACTAATGGTG ACCGCTGCAG TGGCTGCTGG TATCTCCAAC ATCGAATCTG GTTACCAGAT TCCCCAGCTT TCACAGGCTC TAGATTACAT CCATGTTATG ACTTATGACC TGCACGGTTC CTGGGAAGGA TACACTGGAG AAAACAGCCC TCTGTACACT AACCCATCTG CGACTGGATA TAACGCTTAC TTGAATGTTG ACTATGTCAT GAATTACTGG CTGAACAATG GTGCTCCTGC TTCAAAGCTC ATTGTTGGAT TCCCAACCTA TGGACACACG TTTATCCTCA GTAACCCATC CAACAATGGC ATCGGTGCCC CAACTTCTGG GAATGGACCT GCTGGACCTT ACACCAGACA AGCTGGATTC TGGGCCTATT ATGAGATCTG CACCTTCCTG AAGAATGGAG CAACCAACCT TTGGTCTTCT GCTGAAGACG TACCCTATGC ATATCAAGGC AGTGAATGGT TGGGCTATGA TAACGAGAAG AGCTTCCAAA TAAAGGCTGA ATGGCTAATG AAAAATAATC TTGGAGGTGC TATGGTTTGG GCTATTGATC TGGATGATTT CACTGGGACT TTCTGTAATC AGGGAAAGTT CCCTCTGATT AACACACTGA AGAATACTCT TGGTGTTCAA GCATCCGGCT GTACCCCTCC TGCTACTCCT GTTGCTCCAG TAACAGCTGC TCCAGCAACT GTACCTAGTG GCAGTGGCTC TGGAAGCAGT GGATCTGGTA GTAGCTCTGG TGGAAGCTCA GGTGGCAGTG GATTCTGTGC TGGAAAAGCT AGTGGTTTGT ACCCAGTGGC TGGAAACACC AATGCCTTTT GGCATTGCTT GAACGGAATT ACCTACCAGC AGCACTGCCA AACTGGCCTT GTATTTGATC CAAGCTGCGA GTGCTGTAAT TGGCCATGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_012817006.1 |
CDS | 221..1489 |
Translation | |
Target ORF information:
RefSeq Version | XM_012961552.2 |
Organism | Xenopus tropicalis(tropical clawed frog) |
Definition | Xenopus tropicalis chitinase, acidic (chia), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_012961552.2 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261
| ATGTCCAATA ACCAGATCAC CACGATTGAA TGGAATGATG TCACTCTGTA CAGCTCCTTC CAAAATCTAA AGAACCAGAA TGGTAATTTG AAAACACTTC TGGCAATTGG AGGTTGGAAC TTTGGAACTG CACCGTTCAC TGCCATGGTT GCCACTGCTC AAAGCCGTCA GACATTTATA TCTTCTGTGA TCAAATTCCT GCGTCAATAT GGATTTGATG GTCTAGACTT TGATTGGGAA TATCCAGGCT CCAGAGGCAG CCCTCCTCAG GACAAGCAGC TCTTTACCAC ATTGGTTCAG GAAATGTTAG CAGCTTTTGA AGCAGAAGCT TCACAATCCA ACAAGCCTAG ACTAATGGTG ACCGCTGCAG TGGCTGCTGG TATCTCCAAC ATCGAATCTG GTTACCAGAT TCCCCAGCTT TCACAGGCTC TAGATTACAT CCATGTTATG ACTTATGACC TGCACGGTTC CTGGGAAGGA TACACTGGAG AAAACAGCCC TCTGTACACT AACCCATCTG CGACTGGATA TAACGCTTAC TTGAATGTTG ACTATGTCAT GAATTACTGG CTGAACAATG GTGCTCCTGC TTCAAAGCTC ATTGTTGGAT TCCCAACCTA TGGACACACG TTTATCCTCA GTAACCCATC CAACAATGGC ATCGGTGCCC CAACTTCTGG GAATGGACCT GCTGGACCTT ACACCAGACA AGCTGGATTC TGGGCCTATT ATGAGATCTG CACCTTCCTG AAGAATGGAG CAACCAACCT TTGGTCTTCT GCTGAAGACG TACCCTATGC ATATCAAGGC AGTGAATGGT TGGGCTATGA TAACGAGAAG AGCTTCCAAA TAAAGGCTGA ATGGCTAATG AAAAATAATC TTGGAGGTGC TATGGTTTGG GCTATTGATC TGGATGATTT CACTGGGACT TTCTGTAATC AGGGAAAGTT CCCTCTGATT AACACACTGA AGAATACTCT TGGTGTTCAA GCATCCGGCT GTACCCCTCC TGCTACTCCT GTTGCTCCAG TAACAGCTGC TCCAGCAACT GTACCTAGTG GCAGTGGCTC TGGAAGCAGT GGATCTGGTA GTAGCTCTGG TGGAAGCTCA GGTGGCAGTG GATTCTGTGC TGGAAAAGCT AGTGGTTTGT ACCCAGTGGC TGGAAACACC AATGCCTTTT GGCATTGCTT GAACGGAATT ACCTACCAGC AGCACTGCCA AACTGGCCTT GTATTTGATC CAAGCTGCGA GTGCTGTAAT TGGCCATGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.